Chronobiological studies in CUBE

Cubists use Fruit flies, Phyllanthus, and street dogs to address various research questions.

One main question that cubists are interested in is the sleep-wake cycle.

1)Sleep-wake cycle using Drosophila.

Observation made by @saswathy679 CUBE SN College ,Nattika.
Three day observation shows maximum number of fruitflies observed mainly at 12to 2PM and 6 to 10PM.
Less number of flies observed from12am to 6 am.

These data collected by @_Seema_11 CUBE Goa.
Most number of fruitflies observed in 5pm.

The 2017 Nobel Prize in Physiology or Medicine jointly to
Jeffrey C. Hall, Michael Rosbash and Michael W. Young
for their discoveries of molecular mechanisms controlling the circadian rhythm

2)Leaf movements in Phyllanthus, a nyctinastic plant .

Does sunrise and sunset play any role in the leaf opening and closing in Phyllanthus?


DAY;1
24/11/2022.
Sunrise :6.27am
Sunset:6pm
Before the sunrise time : The leaves started to open(6 am)
Before sunset time: the leaves started to close .(5pm)
At sunset time leaves almost completely closed (6pm)

Day 2
25/11/2022
Sunrise :6.27am
Sunset:6pm.

Before the sunrise time : the leaves started to open(6 am)
After sunset leaves: completely closed (6.10 pm)


Day 3
26/11/2022
Sunrise :6.28am
Sunset:6pm.
Before the sunrise time : the leaves started to open(5.15 am)
After sunset leaves completely closed (6.15pm).
Data collected by @Theertha .

WhatsApp Image 2024-05-05 at 8.40.24 PM
Shaurya ,Delhi
Sunrise :6.51am
Place : New Delhi ,Delhi
Time:5 am ,4pm,5pm &6pm
Sunset: 5:25pm
Data collected by @SHAURYA26

WhatsApp Image 2024-05-05 at 8.42.21 PM

Photo: @Lahari
25/11/2022 , Sunrise time: 6:16 AM, Sunset time: 5:38 PM
leaves were started to open at 5:50 AM.
leaves were totally opend at 6:10AM .

Leaves totally closed at 5:00PM .

24/11/2022 sunrise time :6:16 AM ,Sunset time :5:38 PM.
At sunrise time phyllanthus leaves were started to open ,5:50 AM and totally
opened at 6:10 AM.
Leaves totally closed at 5:00
PM.

WhatsApp Image 2024-05-05 at 8.43.46 PM

Photo @Shraddha276 .

Related research questions:
In search of Factors effecting leaf-opening and closing (such as temperature, water etc.)

  1. sleep-wake cycle in Street dogs Vs Pet dogs.
    Why study dogs?
  1. High order mammalian system.
  2. First of wild animals to be domesticated and bred by humans.
  3. Show complex and rhythmic behaviours like humans.
  4. Share the same ecological niche (Urban and rural) with humans.
  5. Create awareness among society regarding the animal welfare.

SLEEP-WAKE CYCLE IN STREET DOGS.

Data collected by @Swaha

Data collected by @Theertha ,Total no.of observations :89.

SLEEP-WAKE Pattern in Pet-Dogs.

Observations by @lakshmy and @Anup.

WhatsApp Image 2024-05-05 at 8.56.30 PM

WhatsApp Image 2024-05-05 at 8.55.55 PM

2 Likes

IMG_20240607_205838

Rahul :Some results from my own experiments suggesting that drosophila has sexual dimorphism in their sleep patterns. Many cubists have been studying the activity patterns in drosophila. Can someone see some connection between the two? @⁨Arunan sir ⁩, @⁨Theertha⁩, @⁨Abhijeet CUBE⁩

[07/06, 7:58 am] Theertha: Continuation of 2017 Nobel prize work with different dimensions!? :trophy: :clap::clap:

This i never thought about (TINTA moment): male and female having two different sleep cycle!
As per the observations:
From midnight, from 1 am to 10 am, males have a higher sleep duration than females. From 10 am to 12 pm, both genders are less sleep duration. From 2 pm to 12 am, females show a higher sleep duration.

It seems they might be taking short naps between 5 pm , 10 pm and 12 am to 1am instead of having continuous 5-6 hours of sleep.They don’t have 6hr continues sleep ? @⁨Rahul CUBE⁩ @⁨Abhijeet CUBE⁩ @⁨Batul Ma’am⁩ @⁨Aastha⁩ @⁨Himanshu Joshi⁩ & others .
[07/06, 8:01 am] Rahul CUBE: Sorry, I forgot to clarify one thing regarding the X-axis here. It is not the time of the clock but the zeitegeber duration (light/dark). So, 0 on the X-axis is 9am and 12 on the X-axis is 9pm.

[07/06, 8:01 am] Rahul CUBE: Sorry, I forgot to clarify one thing regarding the X-axis here. It is not the time of the clock but the zeitegeber duration (light/dark). So, 0 on the X-axis is 9am and 12 on the X-axis is 9pm
[07/06, 8:01 am] Rahul CUBE: Now, Can you summarise your interpretation accordingly?

[07/06, 8:03 am] Rahul CUBE: A Zeitgeber (pronounced “tsite-gay-ber”) is a German term that translates to “time giver” or “synchronizer.” In the context of biology and chronobiology, a zeitgeber is an external cue that helps to synchronize an organism’s internal biological clock to the Earth’s 24-hour light-dark cycle and other periodic environmental changes. These cues are crucial for maintaining circadian rhythms, which are roughly 24-hour cycles in the physiological processes of living organisms.

Common Zeitgebers:
Light:

Primary Zeitgeber: Light is the most potent and well-studied zeitgeber. The presence or absence of light helps regulate sleep-wake cycles and other circadian rhythms.
Mechanism: Light influences the production of melatonin in the pineal gland. Exposure to light, especially blue light, reduces melatonin production, promoting wakefulness. Darkness increases melatonin production, promoting sleep.
Temperature:

Fluctuations in ambient temperature can also act as zeitgebers. For example, lower temperatures at night can help signal to the body that it is time to sleep.

Some information regarding it @⁨Theertha

@Aswathi’s Observations: Three day observation shows that maximum number of fruitflies observed mainly at 12pmto 2PM and 6pm to 10PM.
Less number of flies observed from12am to 6 am.

[07/06, 8:05 am] Rahul CUBE: This is brilliant! Can you summarise both of these graphs? Is there any similarity/differences?? Since you are also interested in Circadian rhythms, use this platform to prepare! @⁨Theertha⁩ !

[07/06, 8:11 am] Himanshu Joshi: How do you define bouts of sleep?
Any other example model system which follow this pattern that you have observed?
@⁨Theertha⁩.

[07/06, 10:15 am] Theertha: My understanding is that, from 9 am to 9 pm, males have a higher sleep duration than females. And , from 9 pm to 8 am, females have a higher sleep duration. This means that both males and females have different sleep durations that are exactly opposite to each other.
Can we say that females will be more active in day and males will be more active in night.@⁨Rahul CUBE⁩ @⁨Himanshu Joshi⁩

  1. In night Females shows a higher sleep duration than males:
    From 11 pm to 8 am, females’ sleep duration ranges above 40 minutes, whereas males show a majority of below 40 minutes.

2)From 7 pm to 9 pm, both males and females showed a sleep duration of less than 20 minutes, indicating a short nap ?

3)From 3 pm to 7 pm and from 9 pm to 11 pm, both genders showed a sleep duration of less than 40 minutes.

  1. From 11 am to 7 am, males show a higher sleep duration than females.
    From 9 am to 3 pm, both showed a majority of sleep durations below 40 minutes, except males showed above 40 minutes between 1 pm and 3 pm. @⁨Batul Ma’am⁩ @⁨Aastha⁩ @⁨Kashyap Sapekhati⁩ @⁨Smiti⁩ & others .
    [07/06, 10:17 am] Theertha: Regulation of sleep: sex-invariant behavior regulated via sex-specific mechanisms:
    Recent studies have begun to illuminate sex-specific modulatory mechanisms that alter the amount of sleep in both males and females (Figure 2). Well-characterized genetic and neuronal sleep mechanisms make Drosophila sleep a powerful model system for understanding the origins of this quantitative sexual dimorphism in behavior.
    males [64–66], likely to meet demands of feeding and oviposition [66]. This may account for the longstanding observation that females are more active than males during the day .
    Frontiers | Sleep in Drosophila and Its Context

[07/06, 10:24 am] Theertha: Similarities:
From @Aswathy’s graph:
There are fewer flies observed at night from 12 am to 6 am. If we compare it with the night part of your graph, flies are showing a sleep duration of 20 to 40 minutes, continuing from 9 pm to 8 am.

The daytime graph for both shows that flies took a short nap.

Difference:
The X-axis represents time, and the Y-axis represents the number of flies.
Your’s includes X axis : time, and Y:sleep duration, also mention the sex.

Summary:
Both graphs show that flies are less active at night. Your graph indicates that sleep can correlate with sex.
[07/06, 10:54 am] Batul Ma’am: TINKE moment! Wow males and females sleep differently in drosophila, need to see references for humans
@⁨Rahul CUBE⁩ @⁨Theertha⁩ please can u tell me what time does 0 on X axis represent so I can interpret the graph
We have seen flies very active during morning 10am and again in the evening 5pm in homelab Kolkata.
[07/06, 11:00 am] Batul Ma’am: Where is @⁨Lakshmy CUBE⁩ these days?Please comment on the circadian rhythm studies showing differences in males and females.@⁨Seema CUBE⁩@⁨~Enas⁩ please can you correlate this study with your study of sleep wake cycle in dogs?
[07/06, 11:08 am] Aastha: Time is measured in zeitgeber (or ZT) hours, with ZT0 being the “lights on” onset and ZT12 being the onset of “lights off” on a 12-hour light, 12-hour dark schedule

Phenotyping Circadian Rhythms in Mice - PMC.

Found this

So maybe 0 - 12hr is the time when lights were kept on , 12-24 is the time when lights were kept off

This is my guess I think others who did this experiment would be able to tell it better :sweat_smile:

[07/06, 11:09 am] Batul Ma’am: @⁨Rahul CUBE⁩ @⁨Theertha⁩
[07/06, 11:12 am] Batul Ma’am: Good.So for us at homelab lights on means daytime 5 or 6am sunrise depending on latitude and 6 or7pm lights off again depending on latitude.If we keep tubelight off after sunset in the room with the flies.
I recall we had done this study in different parts of the country .
[07/06, 11:46 am] Theertha: [07/06, 8:01 am] @⁨Rahul CUBE⁩ wrote that ,: I forgot to clarify one thing regarding the X-axis here. It is not the time of the clock but the zeitegeber duration (light/dark). So, 0 on the X-axis is 9am and 12 on the X-axis is 9pm
[07/06, 11:46 am] Theertha: Light represents the most important Zeitgeber. A standardized 24-hour notation of the phase in an entrained circadian cycle in which ZT 0 indicates the beginning of day, or the light phase, and ZT 12 is the beginning of night, or the dark phase.

Which means a 12-hour day and a 12-hour night. If 0 represents 9 am, then after 12 hours it’s 9 pm, which is night. @⁨Batul Ma’am⁩ ?

Overview of Circadian Rhythms - PMC.
[07/06, 11:48 am] Batul Ma’am: 9pm would be a couple of hours after lights off
[07/06, 5:26 pm] Rahul CUBE: In our lab we maintain an artificial automated light dark cycle. Light turns on exactly at 9am and turns off at 9pm @⁨Batul Ma’am⁩ !

[07/06, 8:09 pm] Batul Ma’am: That means they become active just before lights on and just before lights off.
So in our homelabs where we have compared activity with day and night,the flies should be active just before sunrise and at sunset before dark.
Aswathys graphs show increased activity at sunrise but it continues to show activity post sunset,could it be due to light in the room?

[07/06, 8:27 pm] Rahul CUBE: They are active most of the time. But this graph tells you the pattern of activity and sleep when monitoring individual flies. You’re right they are mostly more active and not sleeping around dusk and dawn. And the general trend is that both males and females spend a higher proportion of time being active during the day and females sleep higher during the night compared to males.

[07/06, 8:30 pm] Rahul CUBE: @⁨Batul Ma’am⁩ , @⁨Theertha⁩ Another interesting thing to notice is that female flies have a sleep-wake pattern similar to humans. What do you think?

Objective: To observe leaf folding movements in Phyllanthus urinaria under continuous darkness.
Hypothesis: Plants kept in continuous darkness will show delayed leaf closing and early leaf opening.
Setup:
:four_leaf_clover:Four Phyllanthus urinaria plants were collected on 27/05/2024.
:four_leaf_clover:Complete leaf opening was observed at 7 am, and complete leaf closing occurred at 6.30 pm on 6/06/2024.
:four_leaf_clover:On 06/06/2024 at 6:33 pm, two Phyllanthus urinaria plants were placed in a plastic bucket and covered. Two of them were placed in the shaded region.
Date of photo:30/05/2024, Cherukkad, Theertha.


[07/06, 4:41 pm] Theertha: Objective: To observe leaf folding movements in Phyllanthus urinaria under continuous darkness.
Hypothesis: Plants kept in continuous darkness will show delayed leaf closing and early leaf opening.
Setup:
:four_leaf_clover:Four Phyllanthus urinaria plants were collected on 27/05/2024.
:four_leaf_clover:Complete leaf opening was observed at 7 am, and complete leaf closing occurred at 6.30 pm on 6/06/2024.
:four_leaf_clover:On 06/06/2024 at 6:33 pm, two Phyllanthus urinaria plants were placed in a plastic bucket and covered. Two of them were placed in the shaded region.
Date of photo:30/05/2024, Cherukkad, Theertha.
[07/06, 4:43 pm] Theertha: Four Phyllanthus urinaria plants were collected on 27/05/2024.Place: Cherukkad, Kozhikode.Photo:Theertha


On 06/06/2024 at 6:33 pm, two Phyllanthus urinaria plants were placed in a plastic bucket and covered. Two of them were placed in the shaded region.Date:6/06/2024. place: cherukkad, Kozhikode.Photo :Theertha


Observations:
Day:1
Sunrise time :6.02am
Sunset time:6.49pm
Time:6.06am
Date:7/06/2024
Place: Cherukkad, Kozhikode
Theertha .


Observations:
Day:1
Sunrise time :6.02am
Sunset time:6.49pm
Time:7.04am
Date:7/06/2024
Place: Cherukkad, Kozhikode
Theertha .

Observations:
Phyllanthus urinaria almost closed its leaves at 5.24pm.
Control:Kept in the sunshade.
Test :Kept in a dark plastic bucket.
Day:1
Sunrise time :6.02am
Sunset time:6.49pm
Time:5.24pm
Date:7/06/2024
Place: Cherukkad, Kozhikode
Theertha .

Observations:Leaves are started to open its leaves in both control and test .
Control:Kept in the sunshade.
Test :Kept in a dark plastic box.
Day:2
Sunrise time :6.03am
Sunset time:6.49pm
Time:6.00am
Date:8/06/2024
Place: Cherukkad, Kozhikode
Theertha .

Breaking news:
The Phyllanthus urinaria kept in the closed bucket did not fully open its leaves, whereas the plant kept in the sunshade fully opened its leaves by 7 am.
Day:2
Sunrise time :6.03am
Sunset time:6.49pm
Time:7.06am
Date:8/06/2024
Place: Cherukkad, Kozhikode
Theertha .


Today ,leaf openings in Phyllanthus Observed at 7 am ,8 am&9.52am.
CUBE Homelab, cherukkad Kozhikode.
Date:8/06/2024.
Photo: Theertha.


Phyllanthus leaves completed opening at 7 am on 7/06/2024, compared to today (8/06/2024) at 7 am. @⁨Batul Ma’am⁩ @⁨Himanshu Joshi⁩ @⁨Amirtha CUBE⁩ @⁨Lakshmy CUBE⁩ @⁨Shraddha⁩ & others.
CUBE Homelab, cherukkad Kozhikode.Photo: Theertha


Observations:
Control:Kept in the sunshade.
Test :Kept in a dark plastic box.
Day:2
Sunrise time :6:03 am
Sunset time:6.49pm
Time:6pm
Date:8/06/2024
Place: Cherukkad, Kozhikode
Theertha .


Observations:
At 6:30 PM, the Phyllanthus in the sunshade closed its leaves, while the plant in the dark box has not yet closed its leaves. @⁨Batul Ma’am⁩ @⁨Himanshu Joshi⁩ @⁨Aditya Joshi⁩ & others.
Control:Kept in the sunshade.
Test :Kept in a dark plastic box.
Day:2
Sunrise time :6:03 am
Sunset time:6.49pm
Time:6.40pm
Date:8/06/2024
Place: Cherukkad, Kozhikode
Theertha .

Phyllanthus kept in the dark box not closed its leaves yet.
Time:8.20pm
Date:8/06/2024
Place: Cherukkad, Kozhikode
Theertha . @⁨Batul Ma’am⁩ i think it may close its leaves at 10pm ? Because the leaves opened at 9.52pm.

Observations:
Control:Kept in the sunshade.
Test :Kept in a dark plastic box.
Day:3
Sunrise time :6:03 am
Sunset time:6.49pm
Time:6am
Date:9/06/2024
Place: Cherukkad, Kozhikode
Theertha .


Observations:
Breaking news The Phyllanthus kept in the sunshade opened its leaves completely at 7 am, while the plant in the dark did the same at 10:55 pm @⁨Batul Ma’am⁩ @⁨Himanshu Joshi⁩ @⁨Aastha⁩ @⁨Amirtha CUBE⁩ @⁨Chithra Ma’am⁩ @⁨Shraddha⁩ & others .
Control:Kept in the sunshade.
Test :Kept in a dark plastic box.
Day:3
Sunrise time :6:03 am
Sunset time:6.49pm
Time:6am
Date:9/06/2024
Place: Cherukkad, Kozhikode
Theertha .


Breaking news:
Phyllanthus kept in the dark box stopped the leaf opening and closing rhythm after 24 hours Waiting for critical analysis from Cubists.@⁨Himanshu Joshi⁩ @⁨Batul Ma’am⁩ @⁨Amirtha CUBE⁩ & others Kindly take a look at the four photos in the two collages, leaf position are same? Sorry that the photo was taken from a different position. I will take care of that from today onwards.
Place: Cherukkad, Kozhikode
Date:8/06/2024
Theertha.

Today’s observation:Breaking news:
Phyllanthus kept in the dark place stopped the leaf opening and closing rhythm after 24 hours.
Place: Cherukkad, Kozhikode
Date:9/06/2024
Theertha.

Control:Kept in the sunshade.
Time :6.30pm
Sunrise time :6:03 am
Sunset time:9.50pm
Date:9/06/2024.

Test :Kept in a dark plastic box.
Sunrise time :6:03 am
Sunset time:6.50pm
Date:9/06/2024.

Control:Kept in the sunshade.
Time :6am
Sunrise time :6:03 am
Sunset time:6.50pm
Date:10/06/2024.

Test :Kept in a dark plastic box.
Sunrise time :6:03 am
Sunset time:6.50pm
Date:10/06/2024.


Time:7am
Control:Kept in the sunshade.
Sunrise time :6:03 am
Sunset time:6.50pm
Date:10/06/2024.


Time:7am
Test :Kept in a dark plastic box.
Sunrise time :6:03 am
Sunset time:6.50pm
Date:10/06/2024.

Test :Kept in a dark plastic box.
Sunrise time :6:03 am
Sunset time:6.50pm
Date:10/06/2024.


Control:Kept in the sunshade.
Sunrise time :6:03 am
Sunset time:6.50pm
Date:10/06/2024.

Control:Kept in the sunshade.
Sunrise time :6:03 am
Sunset time:6.50pm
Date:11/06/2024.





Test :Kept in a dark plastic box.
Sunrise time :6:03 am
Sunset time:6.50pm
Date:11/06/2024.