Summary of CUBE chatshaala

467th Day CUBE Chatshaala : 29th June 2021
Summary
Yesterday’s discussion of cube Chatshaala…What is Moina? How is it similar or different from prawn? Does Moina feed on Milk? Who puts Milk in the pond where Moina is originally found? Why Moina turns Red?




Story of Moina Culture of Cube Palakkad @Shrudhiga, please share your plan How are you planning to culture Moina at your place?

“Celebrating :partying_face: GOOF UPS I LOST MY MOINA CULTURE 24/6 - 2 Culture bottles with 40 Moina each 250ml of Dechlorinated water + 1 drop of milk {fed on alternate days} was shared by @Drishtant 24/6 after Chatshaala 4 subculture was made (1 main and 3 replicates ) Each with 10 Moina + 200ml of Dechlorinated water + 1 drop of milk every alternate days” - @saida786110

468th CUBE Chatshaala : 30th June 2021.
Summary

Discussed about differences between Moina & Daphnia? How to identity Both! Both of them are belongs to ;


Scientific name: Moina
Kingdom: Animalia
Phylum: Arthropoda
Class: Branchiopoda
Order: Cladocera
Family: Moinidae
Genus: Moina


Scientific name: Daphnia
Kingdom: Animalia
Phylum: Arthropoda
Class: Branchiopoda
Order: Cladocera
Family: Daphniidae
Genus: Daphnia

Both are Crustaceans and phylum Arthropods.
Why they are belongs to phylum arthropods!? What is the characteristics features of arthropods!?
Meaning of appendage!?
a projecting part of an invertebrate or other living organism, with a distinct appearance or function.

IMG_20210701_235202
Abstract ;
File:Biology Illustration Animals Insects Drosophila melanogaster head.svg.
In contrast, the commonest current use of the term is in the anatomy of the mouthparts of Diptera, particularly those in which the labium forms the bulk of the proboscis, such as in the housefly family. Typically, the labium is expanded distally into a pair of fleshy labella. In the early twentieth century it was argued that the labella are the modified labial palps, and that point of view still is seen as having merit.In flies such as the mosquitoes, that have long antennae, the labella are two separate organs, attached to the proboscis only at their bases, but in the flies with short antennae, such as the house fly, they are more or less fused to form a single structure. Flies with fused labella have food channels in the surface of the labella. These are called pseudotracheae.They form the “spongy” part of a housefly’s “tongue”.

•Does a fly have a sense of smell?
•How do fruit flies detect fruit?
How Fruit Flies Sense Smell? Which Organ Help Them to Sense Smell!?:thinking:
•How do fruit flies smell?
•What smell attracts fruit flies?
Like Glucose or IAA! why?

Antenna helping them to senses smell molecules.
Flies have an extraordinary ability to detect odors from great distances.
Flies have been shown to be able to detect odors from up to four miles away!

IMG_20210701_235312
IMG_20210701_235227
Diagram shows inside senssila what kind of receptors present in the hair. How smell molecules bind towords the receptors.

Iorn channel passing signal through neurons.
IMG_20210701_235145.
IMG_20210701_235246.
ion channel signal passage
Ion channels are located within the membrane of all excitable cells, and of many intracellular organelles. … In many ion channels, passage through the pore is governed by a “gate”, which may be opened or closed in response to chemical or electrical signals, temperature, or mechanical force.
How do ions move through ion channels?
Ion channel receptors are usually multimeric proteins located in the plasma membrane. … These passageways, or ion channels, have the ability to open and close in response to chemical or mechanical signals. When an ion channel is open, ions move into or out of the cell in single-file fashion.
https://www.sciencedirect.com/topics/medicine-and-dentistry/ion-channel

469th Day : CUBE Chatshaala.
Summary

FRUIT FLIES
WhatsApp Image 2021-07-03 at 3.04.17 PM

Discussed about model system Fruit flies…
Design of the experiment!
Problems faced in B18 culture bottle.
How to save B species flies.!?

SLBK B18 - 28.05.2021
More than 1 month old culture bottle observed ;
23.06.2021 : 1 Larvae
25.06.2021 : 2 Larvae
29.06.2021 : 3 Flies (2F,1M)
30.06.2021 : 3 Flies (2F,1M)
01.07.2021 : 2 Flies (2F)

Design : Transfer 2 flies from B18 to B19 - 02.07.20201. Keep them 2 days in B19 bottle for laying eggs. After transfer those 2 female flies from B19 to B20 - 04.07.2021 bottles for to get more progeny’s of same flies.
WhatsApp Image 2021-07-03 at 3.15.49 PM

TRSV Media - Tomato :tomato:, Rava :rice:, Sugar :salt:, Water :sweat_drops:, Vinegar :sake:.

•How to make standard TRSV media!? :thinking:

•Some time tomatoes are not much visible in media some times not!!

•How can we sort it out this issues? :thinking:

Homogenized media!
WhatsApp Image 2021-07-03 at 3.22.58 PM

Expectation

SLBK B18 TD to SLBK B19 2nd July 2021 :@8:00am

•SLBK B19
02.07.2021 - TD 2F Flies
02.07.2021 - Eggs
03.07.2021 - Small Larave
04.07.2021 - Visible Larvae
06.07.2021 - Pupae
10.07.2021 - New Flies

SLBK B19 TD to SLBK B20 4th July 2021 :@8:00am

•SLBK B20
04.07.2021 - TD 2F Flies
04.07.2021 - Eggs
05.07.2021 - Small Larave
06.07.2021 - Visible Larvae
08.07.2021 - Pupae
12.07.2021 - New Flies
WhatsApp Image 2021-07-03 at 3.28.17 PM

SLBK A18 - 28.05.2021
TD : 8
•24th June Data - 0F, 0L, 0P
•1st July Data - 0F, 0L, 0P
18 Days old bottles…

SLBK A19 - 13.06.2021
TD : 5
•24th June Data - 15F, 10L, 15P, 5DF
•1st July Data - 12F, 10L, 10P
18 Days old bottles…

PSYCHE BUTTERFLY
WhatsApp Image 2021-07-03 at 3.34.32 PM

@Shraddha was explained about psyche butterfly laying eggs in Cardamine plants, Cleome plants.
Larval Host Plants:
2010; Wynter-Blyth 1957) (Capparaceae). Cleome rutidosperma var. burmannii (Kalesh & Prakash 2015), Cleome viscosa (Wynter-Blyth 1957; Kunte 2000) (Cleomaceae). Azima tetracantha (V.C.
Where do Psyche butterfly lay eggs Why?
Why they choose particular Host plants for laying eggs!?

470th Day : CUBE Chatshaala.
Summary

FRUIT FLIES
WhatsApp Image 2021-07-03 at 3.40.40 PM

@Shraddha was trying to explained about how to trap fruit flies surrounding native places. And how to start single line cultures! Using tomato trap :tomato:.
How to place Fruit kept bait in order to trap Fruit Flies according to Shraddha point of view…
WhatsApp Image 2021-07-03 at 3.42.39 PM
WhatsApp Image 2021-07-03 at 3.45.46 PM

Single line culture of fruit flies…Meaning of Single Line Culture…
•How to trap one gravid flies using tomato bait!?
•How to identify Females & males looking their abdomen…
Why we need a culture!?
WhatsApp Image 2021-07-03 at 3.49.29 PM
WhatsApp Image 2021-07-03 at 3.54.15 PM

What is the importance of culturing flies.!?

How can we find D.melanogaster around native area.?

What is the importance of this fly?

Further research questions?

Research question : Compare sensing capacity of fruit flies Native & Lab bred D.melanogaster using their 2nd instar larvae.

*How to perform this Experiment in Lab/Home?

*What are the criteria we need to make sure!?
*Null Hypothesis!
WhatsApp Image 2021-07-03 at 3.55.34 PM

How to harvest 2nd instar larvae for to perform olfactory experiment!? Design of this Experiment

471st Day : CUBE Chatshaala.
Summary

Goof Ups we can say…
"It is NATRURAL we MISS OUT when we do research ALONE!"


One of the single line culture of B line I was thought I Loose it and throw it away… But with the help of Great collaborators… I found out actually the culture was not completely exist… There is some Larvae, Flies I observed.

Story was starting SLBK B18 - 28.05.2021 Subculture bottle.

SLBK B18 - TF 8
4 - M & 4 - F
[Flies - F, Larvae - L, Pupae - P]

24.06.2021 - 0F, 1L,0P
25.06.2021 - 0F, 2L,0P
26.06.2021 - 0F, 0L, —
27.06.2021 - —, ----, ----
28.06.2021 - —, ----, ----
29.06.2021 - 3F,----,-----
30.06.2021 - ----,----, ----
01.07.2021 - 2F, ----, 0P

Microworms present inside the bottle.

Goof Ups : In between I miss out many data.
Major goof up I didn’t check what is the condition of bottle every days :confounded:. Not make a data for to annalise whats happing inside a culture bottles.

471st Day : CUBE Chatshaala
Summary


What is Bioinformatics!?
the science of collecting and analysing complex biological data such as genetic codes.

Data Base… e.g : Drosophila - Fly base data.

Homeotic mutation in drosophila.

Mutation : it’s a kind of Gene expression…How can we call it as a Mutation :thinking:? All kind of gene expression can we call Mutation!?

E.g : Moina Hypoxia Conditions.

In Low oxygen level Moina body turn in to Red. It’s a kind of Hemoglobin gene expression taking place inside body of Moina.

According to @shrudhiga Hemoglobin is a Protein.its present in RBC cells. Hemoglobin carrying O2.
Hemoglobin present in only RBC cells!?
Moina do have any RBC Cells?

Later discussed about ; @shrudhiga Home labs Updates.

•How to identify Moina & Daphnia?
•Difference between Moina & Daphnia?
•How to identify them in Taxonomic level?

Kingdom:Animalia

Phylum:Arthropoda
E.g of arthropods : Fruit Flies, Crabs, Ants, Moina, Daphnia.

Subphylum:Crustacea
E.g : Crabs,Moina,Daphnia, Prawns.

Class:Branchiopoda
Why they are belongs to Branchiopoda!?

Order:Cladocera

Differences is came in Family level : Moina Belongs to Family Moinidae, Daphnia Belongs to Daphniidae

What are the different features between moina & Daphnia…
Antenna & Antennule…
What are other key features to identify Moina/Daphnia?

How to find a Reliable Reference in Google!? How to make sure it’s relabel or not?:thinking:

Taking Good Photos Will Help Us To Find Moina & Daphnia.

472nd Day : CUBE Chatshaala.
Summary

Yesterday discussed about model system Phyllanthus. @Sunita ma’am & her students from CUBE Ratnam joined yesterday chatshaala.They were already started to studied about phyllanthus plant. Made a Potting mixture for create good atmosphere to grow plants.
Potting mixture :-
1)Soil - One and half Kg beaker.
2)Cocopeats - 100mL beaker.
3)Sand - 100mL beaker.
4)Compost - 1/2 Kg.

How will cocopeats help the plant?

Phyllanthus
•Why Phyllanthus!
•Importance of Phyllanthus plants!
•Uses of Phyllanthus plants!
Which type of disease is useful!?

What kind of Research Question we are addressing in this plant?

Phyllanthus plants coming under Phyllanthacea. Leaves are showing opening and closing behavior.
E.g of plants : Mimosa pudica,Gooseberry plants, Tamarindus indica.
Common name of phyllanthus Buavi amala (Hindi), Kezharneli (Malayalam), Keyukaneli (Tamil).


@Sunita ma’am observed Phyllanthus plants were waking & sleeping earlier before Sunrise & Sunset

Mumbai
6:05 am
Sunday, 4 July, 2021
Sunrise in Mumbai, Maharashtra

7:20 pm
Sunday, 4 July, 2021
Sunset in Mumbai, Maharashtra

Related Questions From BBB Public Chat box.

1)What is the Sunrise time in places where we located leaf opening at 5am?

2)Sunset in Mumbai is at 7:20pm! Why do they slerp earlier than Sunset?

3)Does the waking and sleeping have anything to do with sunrise- sunset timing?

4)When do they close leaves? Have they closed leaves now at 6;42 pm?

5)Rain effect their sleep wake cycle? Any connection between them?

6)What is the internal factor or factors? What does the Nobel Prize winning work telks us?
@2020ugchsncnseethala @Sunita @saida786110 @KiranKalakotiR

Internal factors are controlling their activities…Even plants & animals.
What about the Nobel Prize winning work on Biological Rhythm studies?

Who discover circadian rhythm :thinking:!?

The first scientific observation of circadian rhythm was made in 1729 by the French astronomer Jean Jacques d’Ortous de Mairan, who placed the mimosa plant in a light-tight dark room and observed that the plant continued to unfold its leaves in the morning and close them in the evening.

2017 Nobel prize Work Circadian rhythm
Hall and Rosbash also showed that its protein, called PER, rose and fell over 24 hours, peaking at night and degrading over the day. They suspected the clock was driven by a feedback loop, with high levels of PER interfering with period and inhibiting its activity, which would cause the levels to subside. But to do so, PER, made in the cytoplasm of the cell, had to get into the nucleus.

So is it like, during the experiment on mimosa, even in absence of external factor (sunlight), the cycle of sleeping n waking was carried out undisturbed by ‘internal factors’?

Folk medicinal uses of different parts of M. pudica.
Plant part used Uses References
Roots Dysentery, small pox, fever, ulcer, jaundice, leucoderma, inflammations, asthma, hemorrhoids, and fistula Vaidyaratanm (2001); Pande and Pathak (2010)
Expedition of delivery Haque and others (2011)
Rheumatism Hasan and others (2012)
Leaves Treatment of hydrocele, hemorrhages, fistula, conjunctivitis, hemorrhoids, and wounds Sharma and others (2001); Pande and Pathak

Other than sleep wake cycle what else Research Questions can we address in phyllanthus plants :thinking:?

Heteroblasty - anther research question cubists are addressing.

@adita joshi using seedlings plants of phyllanthus to study leaves growth of first branch it self. Opening and sleeping behavior of plants.

473th Day : CUBE Chatshaala.
Summary

Whiteboards
Discussed about alzheimer’s disease in Fruit flies…



IMG_20210706_184214
IMG_20210706_184202


Please add your inputs @KiranKalakotiR @saswathy679 @2020ugchsncnseethala

@Kiran Yadav :point_down:
In the last session we had the discussion on imaginal discs of insects, drosophila as a model systems to understand development of imaginal discs and effect of alzeimer’s on the imaginal disc development.
Below listed are some the questions being asked in the discussion

What is an imaginal disc?
Does Imago have anything to do with imaginal disk? What is an imago? which stage of the life cycle can be called an imago?
MAGINARY!!! Why the word IMAGINAL?
Is there an Imaginal disk for Brain?
Where is this disc located?
Imaginal Discs as an early markers of Alzheimer`s progression:
To check whether Alzheimer’s develops at the larval stage or only at adult stage due to age? by comparing
imaginal discs of normal larvae with an alzheimer’s fly larvae, this would give us an idea if deformity in imaginal discs is an early signs of possible Alzheimer’s detection? and can it act as an indicator for testing drug efficacy ? Are there literature studies available backing it
Is it visible to naked eyes?
What is the difference in embryogenesis and metamorphosis?
Difference in the cell body and neuropil? also grey matter and white matter?
Which stain can be used to stain neuronal cell bodies?

1 Like

475th Day : CUBE Chatshaala
Summary



Whiteboard screenshots from yesterday’s CUBE chatShaala ( 07th July 2021 ) we had the discussion on seasonomics, that how to analyse the mango mapping data that we have collected successfully. Analysing data could also revive the curiosity for mango mapping…
Why to choose fruit fly as a model system to understand alzeimer’s over other model systems?

We had some kalapna fellows in the session yesterday , where some of the are very interested in studying alzeimer’s disease and also interested in using fruit fly as a model system to understand alzeimer’s. In alzeimer’s disease there is accumulation of amyloid plagues that causes because of the misfolding of amyloid protein. With the context of alzeimer’s we had a very interesting discussion on misfolding of proteins. There was a input from Dr. Arunan about sickel cell anaemia.



Gal4 uas system sukriti had gave very interesting and important inputs on alzeimer’s and Gal4 uas system.

1 Like

476th Day : CUBE Chatshaala.
Summary

IMG_20210709_111327

How to Connect CUBE Home Lab Experiment with the Curriculum.!

Concept Map of Fruit Flies.
•Ecology.
•Development Biology.
•Behavioral Biology.
•Molecular Biology.
•Evolution.
•Mutation.
•Genetics.
•Taxonomy.
•Anatomy.
•Paper Chromatography.

Related Experiments Done in Home Labs…

How its connected these concepts in our curriculum!?

Please add your points…

IMG_20210709_111417
Experiments we are addressing in colleges, few examples : Gram staining, Taxonomy (Identifications) Plants and Animals, Chemistry - Estimations using Acid & Base.

IMG_20210709_111340
IMG_20210709_111356
EXAMPLE :
Culturing Fruit Flies Address Related Research Question!
Finding related questions are :
•Data methodology - Data collection.
•Behavioral Study
E.g : Phototaxis, Negative geotaxis, Positive geotaxis

1 Like

SUMMARY - 16.07.2021
CUBE Chatshaala

HOW TO CULTURE BACTERIA IN HOME LAB

How do we culture bacteria say, from finger tips as soon as we get up in the morning?

Bacteria from any part? What is the possible design?

Any Hypothesis? And how do we test the hypothesis?

How do we know whether my finger tips have any bacteria?

How the reaction exactly takes place of taking the stain.

What is the conventional medium for this?

What is gelatin?

Gelatin? WHY?

What is common in Gelatin & Agar?

How about Potato slice?
What is gelatin and how is it related to Agar?

How about Potato slice as a solid surface for culturing bacteria ?

What to do:

  1. Boil two medium-sized potatoes for 20 min, and allow them to cool.
  2. Clean a Petri-dish or watch glass and place a folded piece of tissue at the base. Keep the tissue
    moist with the boiled water.
  3. Peel one of the potatoes and cut into 0.5 cm thick oval slices along its length, maintaining uniform
    thickness.
  4. Place a slice on the wet tissue in one watch glass. Do the same for the other three watch glasses.
  5. To the centre of three of the slices, add 1 ml of curd/buttermilk each using a dropper or pipette.
    Use a clean spoon to spread the curd evenly on the slice until it gets completely absorbed. Label
    these slices as:
    • ‘Curd control’ or CC,
    • ‘20 mg’, and
    • ‘50 mg’.
  6. Take another slice of potato. Do not add curd to this slice. Label as ‘Antibiotic control’ or AC.
  7. Use a scalpel to scoop out a shallow well in the middle of all four slices, ensuring that the wells
    do not get punctured at the bottom.
  8. Place all four watch glasses in the moist chamber.https://archive.azimpremjiuniversity.edu.in/SitePages/pdf/Publications/I-Wonder/Sub-PDFs/resources-iwonder-issue-4-May-2020/R3_11F_Penicillin.pdf

[Here is a publication By Rohini & Subhojith]
WhatsApp Image 2021-07-17 at 11.41.18 AM
WhatsApp Image 2021-07-17 at 11.41.37 AM
Microbes like Fungi, Bacteria, Yeasts present in potato slice.Microbial growth showing potato slice.

Uploading: WhatsApp Image 2021-07-17 at 11.41.50 AM.jpeg…

HOW TO MEASURE THE SIZE OF BACTERIA UNDER MICROSCOPE?

Which medium was this?

What is the size of an average Bacteria? What is the size of E coli?

1micron size organism with 40x objective and 10x eye piece will show it as 400 micron meaning ??? How many mm?

What is the calculation?

What does 40X show us?

What is the calculation? Why we cannot see under 40X?

What is the size of Bacillus subtilis?

B. subtilis cells are typically rod-shaped, and are about 4–10 micrometers
What would be the Magnification of himemade Microscope?

How would we calculate this for homemade Microscope?
Is there any formula?

REFERENCE

Did granny know best? Evaluating the antibacterial, antifungal and antiviral efficacy of acetic acid for home care procedureshttps://bmcmicrobiol.biomedcentral.com/articles/10.1186/s12866-020-01948-8

Aside from its antibacterial properties, vinegar has been effective in treating fungal infections. In one study, the researchers wanted to examine the antifungal activity of apple cider vinegar on certain Candida species.Does Vinegar Kill Bacteria?

1 Like

SUMMARY
CUBE Chatshaala.

PHYLLANTHUS NIRURI CONTROVERSY

  • P. amarus is a common plant across the India.

P. amarus has been identified as P. niruri but P. niruri is not native to India.
Flora of British India- P. niruri is a combination of three species P. amarus, P. debilis, P. fraternus.but later they has mentioned these three are different species.

Based On Reference

P. niruri L. is a native of New World and endemic to America and does not occur in India, although there are many publications in India claiming work on P. niruri L. Those reports are actually pertaining to investigations in ‘niruri complex’ but not on P. niruri L. Herbaceous Phyllanthus species found in Tiruchirappalli district has been recorded and their morphological and anatomical parameters were assessed and a simple key developed. SCAR Analysis for validating the identity of P. amarus is presented for authentication at molecular level. P. debilis, a coastal zone species is first reported from an inland area.Systematic Studies in Herbaceous Phyllanthus Spp. (Region: Tiruchirappalli District in India) and a Simple Key to Authenticate 'Bhumyamalaki' Complex Members | Journal of Phytology



https://updatepublishing.com/journal/index.php/jp/article/view/2239/2217

REFERENCE

Gonzales County, where it appears to be extirpated; L. E. Brown and S. J. Marcus 1998); it is widespread in the American tropics. Like P. urinaria, it is widely used in folk medicine and is the subject of intense pharmacological research. Plants from outside the West Indies and Caribbean northern South America often have been segregated as subsp. lathyroides; the differences are trivial and recent authors (G. L. Webster 2001; V. W. Steinmann 2007) did not subdivide the species.http://www.efloras.org/florataxon.aspx?flora_id=1&taxon_id=220010364

HOW DO YOU IDENTIFY PHYLLANTHUS NIRURI & AMARUS BY MORPHOLOGY FEATURES ?


IDENTIFYING URINARIA & AMARUS - LOOKING MORPHOLOGY BASED.


What is the relationship in different species of phyllanthus? Relationship means similarities and disimilarities.

Identification is a key to use phyllanthus species in medicine
-Identification is an important aspects of usage of phyllanthus in medicine.

हिन्दी : भुंई आमला, भूआमलकी, हजारदाना, जरमाला, जंगली आंवला
संस्कृत : भूम्यामलकी, भूधात्री, तामलकी, बहुफला
बंगाली : भुंई आमला
गुजराती : भोंय आंवली
मराठी : भुंई आंवली
कन्नड़ : किरनेलीगिन्डा, किरूनेल्ली, नीलानेल्ली
मलयालम : कीझारनेल्ली, किलानेल्ली, किलु कानेल्ली, किरगानेल्ली, किरूतानेल्ली
उड़िया : भुंई औला
तमिल : कीझानेल्ली, कीझाक्कानेल्ली
तेलगू : नेलाउसिरीकी
वानस्पतिक नाम : फाईलेन्थस एमेरस अथवा फाईलेन्थस निरूरी (Phylianthus amarus Schumothon)
अन्य संबंधित प्रजातियां : फाईलेन्थस फ्र्रेटनर्स बेनेल, फाईलेन्थस यूरीनेरिया लिन
वानस्पतिक कुल : यूकार्बिएसी (एरण्ड कुल) (Enphorbiaceae)

P. niruri as per stem -Terete/Round
Cataphyll- scale
stipulus-Brown

little projection in amarus
Leaf apex-completely round/obtuse
Leaf surface-no hair/glabrous

Inflorescence
Male flowers are towards the base, females are at the base.
Tepals - Majorly 5 or sometimes 6, same as in amarus
Pistilaate folwers: 5, in case of amarus majorly 5 or sometimes 6, in case of fraternus majorly 6 or sometimes 5.

2 Likes

SUMMARY
CUBE Chatshaala

Sachi from wardha Mumbai Joined yesterday Chatshaala and discussion about microbial growing in different food materials.

Sachi made a experimental setup using 2 different food Bread & Chapatti kept in a Tiffin box closed with the led and keep it in kitchen side on 30/07/2021 : 3:30pm, Yesterday evening.

Expectations was that Bread will get fungus very fact compare to Chapatti because of moisture content.

Why Bread Got Fungus Very Fast Compared to Chapatti?

What Kind of Microbial Growth We Can Expect in Chapatti?

How Fungus Grow in Moist Place!? What is the Reason Behind That!?

Importance of REPLICATES …if you want to experiment this in your home lab, how many Chapati & Bread will you take for to study this experiment!?

Please Give Your Suggestions

DESIGN OF THE EXPERIMENT

Setup A : Bread Keep in separate Tiffin box

Setup B : Chapati Keep in separate Tiffin box.

Closed with led for whole one night open next day morning…

Which Will Get Fast Microbial Growth!? Why?

According to Kajal - Chapatti will take to many time to get fungus - Minimum 2 days.

Also @Kajal want to connect it with FRUIT FLIES studies. Using these food will attract fruit flies. Kajal expecting more flies on next day after keeping setup.

Expectations :Starting from
07:00am - 1 fly
09:00am - 3 flies
11:00am - 8 flies
01:00pm - 12 flies
03:00pm - 20 flies
Increasing number of flies because of Rain season.

Is there any connection between Temperature & Fruit Flies.

PHYLLANTHUS

Phyanthus model Collaborators are arunan sir, aditya joshi, lakshmy, janhvi, sunita, kiran ma’am, shrudhiga, shraddha

Contacted study is SLEEP/WAKE Pattern of phyllanthus plant.

How to Identify Phyllathus different species looking the morphological characters.

SUMMARY
CUBE Chatshaala.

:black_medium_square:HOW TO FIND RELIABLE REFERENCE FROM GOOGLE?

:black_medium_square:WHAT ARE THE MAJOR CRITERIA WE NEED TO CONFORM THAT REFERENCE IS AUTHENTIC OR NOT!

:black_medium_square:IMPORTANCE OF KEYWORDS.

these are the major issues we were discussed in yesterday CUBE chatshaala. Because students are major facing issues to finding a authentic reference. Importance of keywords - how to make it short sentence that what we want to search. If we got a reference how will we go through that article/book is relevant or not. Major criteria we need look that the article name, published year, author’s name, which journal, is there any cross reference or not these are the major things we need to look.

If we have a statement related based one object, how to provide that our statement is True or False by looking through article.

e.g
Yesterday we discussed about Kiran from Moradabad - Uttar Pradesh home lab updates.


@KiranKalakotiR Yesterday kept a mango bait in garbage bin area for to trap fruit flies. In that garbage already had some Pupae shell …some of them are hatched and one is not hatched observed from her picture.

Day before yesterday @yash_sheregare was shared a picture is Larvae turn to pupae. This condition calling Pre - pupae. Pre pupae is before turning pupae.


Pre- pupae Picture is shared by @Rahul (from lab)

So, How many stages Drosophila Pupae have !?

Pre - Pupae + 4 stage Pupae = 5 Stage Pupae. (this is my statement before finding reference so, I need to provide / disproved this statement using relabele reference)

Found one reference :

“Metamorphosis in Drosophila may be divided into two stages: a 12 hour prepupal period marked by pupariation (the onset of the larval-pupal transition), and a subsequent pupal period lasting 84 hours.”
https://www.sdbonline.org/sites/fly/aimain/1adult.htm

This is the link to the article
Title - The Interactive Fly
This article is by SDB - Society for Developmental Biology (https://www.sdbonline.org), a society or an organization that started in the year 1939
The Interactive Fly © 2020 Thomas B. Brody, Ph.D.

In this article says that :
Pre - Pupae = 12 hours
Pupae = 84 hours (3Days + 12hours)
Total = (12hours + 84hours) 96hours that means 4Days need to complete the metamorphosis inside pupae.

(:point_up_2:this conclusion is based on one reference)

One other article shared by Janhvi
Link
Name of article : Staging the metamorphosis of Drosophila
melanogaster.
Authors : By S. PAUL BAINBRIDGE AND MARY BOWNES1
Journal : /. Embryol. exp. Morph. Vol. 66, pp. 57-80.
Published Year : 1981
From the Department of Molecular Biology, University of Edinburgh.

In this article saying is that Pupae have 15 stages each and every body developments are different stages in pupae.

Starting from Pre pupa
Stage PI (Whitepuparium), totally 15stages they are mentioned in this article.
*(Most of the words meaning is not much familiar to every one, need to find it.)

Drosophila Development Stages in Pupae.

There is some sites in Google we can easily go through and find out what we want. N C B I, PubMed are mostly help to get authentic references. When we want to search an article related one object, we need to make it short sentence (Keywords). In these sites we can able to see many other related projects done by several scientists and researchers. Other one thing we can also search in Google scholars. But Google scholar is a part of google so we will get mixed (authentic / not authentic). But also we can look article name, Year, authors, Journal, Cross reference, Peer reviewed or not etc…We need to make sure at every points.

  • Shared by @⁨Sukriti⁩

Please add your comments on it. @Lydia mam @KiranKalakotiR mam @saida786110 @2020ugchsncnseethala @yash_sheregare @magpie mam

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SUMMARY OF CUBE CHATSHAALA

IMG_20210806_150244_666

Concept map of MOINA

•Micro biology •Molecular biology •Biochemistry •Bacterial growth curve •Cell biology.

We often discuss bacterial growth curve whenever it comes to the concept of low level of oxygen.also we had the discussion around the differences and similarities in Chromosome, DNA, gene, protein,chromatids.discussion sometimes on what’s the body fluid in Moina…

:black_medium_square:What is the connection between Micro biology & Moina!?

:black_medium_square:Difference between Micro - Macro organisms! Examples.

Concept map is not complete yet. Please add points

IMG_20210806_150241_650

SNAILS

@Subham from odisha was discussed about maintained setup of Gaints African snails from his college lab.

@Saida explained her home lab setup for maintain snails.


Feeding
This herbivore does not discriminate between living or dead plant matter. It has such an enormous appetite that it feeds on more than 500 types of plants, including those farmed by humans.

The Giant African Snail eats leaves, flowers, fruits, stems, barks, wood, seeds, grains, nuts, seaweed and even lichens, fungi and other snails. Economically valuable crops for humans such as cauliflower, cocoa, papaya, peanut, cassava, banana and many other vegetabljes often become food for the giant African snail.Giant African Land Snail - Snail Facts and Information

:black_medium_square:What’s the difference in learning and memory?

Learning is something which occurred from experience.with the repeated experience of similar thing (the same info) conceived as memory.

CARDAMINE

Discussion about ;

:black_medium_square:How can we identify different species of Cardamine looking their morphology features?

Which morphology part need to look for identifying at species level? Flowers, Leaves, Stamens etc

:black_medium_square:What is cruciform?
So cruciform is about petal shape!

Brassicaceae (/ˌbræsɪˈkeɪsii/) or Cruciferae (/kruːˈsɪfəri/)[2] is a medium-sized and economically important family of flowering plants commonly known as the mustards, the crucifers, or the cabbage family. Brassicaceae - Wikipedia
Cruciform means having the shape of a cross or Christian cross. Cruciform - Wikipedia
I also didnt know what is cruciform and its meaning… So this helped…

:black_medium_square:Is it shape or arrangement?

We can check the above the link to observe the different arrangement of petals
This flower has Crucifrom (cross like arrangement of petals)…

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SUMMARY
CUBE CHATSHAALA


Phyllanthus Plants - Continuous Light/Dark Experiment.

@Shraddha shared her data of continues Light/Dark (with control) experiment started in Panvel - Mumbai. Addressing research question Continues Light/Dark will be effecting sleep wake pattern of Phyllanthus plants.

Experiment taken plant was Phyllanthus urinaria.

4 plants each for Control, Continuous Light and Continuous Dark.

Plot one graph based on the 6 days data’s from morning & evening , when plant is started to waking and started to sleeping (during time)

Control Data is constant in this graph. Light/Dark showing some changes throughout every days.


:black_medium_square:What will be the effect of plants near Street lamps?

:black_medium_square:Comparing Circadian rhythms gene in Animals & Plants.

Example one article saying about Arabidopsis - circadian clock

•CIRCADIAN AND CLOCK ASSOCIATED1 (CCA1)
• LATE ELONGATED HYPOCOTYL (LHY)

These gene are effecting the circadian rhythm of plants.

please add your comments…


A simplified version of the Arabidopsis circadian clock is illustrated in Figure 3 (see also Table 1). It comprises three interlocked feedback loops, with two single Myb domain transcription factors, CIRCADIAN AND CLOCK ASSOCIATED1 (CCA1) and LATE ELONGATED HYPOCOTYL (LHY), playing roles in each loop. TOC1, the founding member of a family of pseudo-response regulators (PRRs), closes one loop, while three TOC1 paralogs, PRR5, PRR7, and PRR9, close a second loop. A third loop includes a Myb transcription factor, LUX ARRHYTHMO (LUX).


Continues Light & Dark Experiment Done by Sunita ma’am from Mumbai

Experiment started on 4th July 2021 with 3 pots. Taken Phyllanthus species - Phyllanthus amarus. Each pots have 4 plants. Still continuing this experiment…

:black_medium_square:Setup 1 (Pot 1) : Control
:black_medium_square:Setup 2 (Pot 2) : LED
:black_medium_square:Setup 3 (Pot 3) : Dark

Expectation : Delay the pattern on sleep wake cycle which are kept it in Light and Dark.

Observation : Phyllanthus plants are not closing their leaves which are kept in continues LED and Dark.

Conditions of plants;
LED kept plants : 1 plant is remains today. Other plants dried and yellowish colored.
Dark kept plants : Died.

Starting experiment time plants showed the delay of sleeping waking time but after 5 days later (10/07/2021) showed these plants are not closing leaves which are kept in continues dark and light period.


Similar kind of behavior started to observed Shraddha in her continues Light experiment setup also after 6th days later started experiment.

2 pots plants are not sleeping which are kept in LED at 9:30pm.Leaves are still opened in at 9:30pm.
Also 12:00am 4:00am checked these plants - still these plants were opened leaves.

Photo shared by Shraddha - 05/08/2021 ; 9:30pm.

One pot plant started to drying. Plants showing not healthy conditions. Watering every day morning time (Once in a day).

:black_medium_square:What could be the reason plants not started to closing leaves!? Is there any effect of Light!

@Shraddha - Panvel @KiranKalakotiR mam @2020ugchsncnseethala @saida786110

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Summary of Today’s Chatshaala(14th August 2021)

Today, chatshaala started with my(Abhijeet) journey in Cube since I joined i.e from 7th std. So I joined and started working on Mosquito project with my friend collaborators from my school only. We used to catch mosquitoes collaboratively and individually at school and our respective homes. The aim was to predict that in which month the number of mosquitoes will increase (because of which we maybe able to see increase in the number of mosquito born diseases for example malaria etc) in our locality so that we can prevent it from happening by destroying the possible breeding site of mosquitoes which includes water collected in thrown water bottle, coconut shell, pot holes besides roads, gardens and anywhere were water is collected as mosquitoes lay eggs in that.
We also worked on Earthworm, daphnia culturing, and snails.
Till 9th I worked then took break for 3 years for 10th and 12th board exams.

After that we discussed about what *Ashwathy has been doing since when she joined that is I guess April 2020. Discussion on trapping was done then ashwathy told that she was mainly trying to find Drosophila Melanogaster from the traps through which she used to catch fruitflies. Discussion on why D.melanogaster is taken as model organism was done and turns out that it genes similar to that of humans and the sleep-wake cycle or activity rythm too Also many nobel prize has been announced with D.melanogaster studies

We can onto the discussion that what’s the difference between Model organism and Model system. At 1st we were confused with the terms but after discussion we came to an understanding that both are one and the same it’s just how an individual keeps it in front of us with respect to the organism he/she is working with.


Again we came to discuss the activity pattern or rythm of fruitflies with the help of Ashwathy’s work. So ashwathy tried to explain it with the help of a setup. So what we get was that Fruitflies are active during day time and very much or almost inactive at the night time as of with humans.

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SUMMARY
CUBE - Chatshaala

Discussed about smelling sense capacity of 2 different D.melanogaster one from native (brought it from kitchen area) & another from Lab cultured fruit flies more than 70years passed (CsBz melanogaster - one of the lab bred).

Long term objective :
To perform olfactory assay at range of concentrations of IAA (banana essense)
using standard CsBz 2nd instar larvae and Native Drosophila 2nd instar larvae and compare their olfactory sensitivity to comment on evolutionary changes in terms of fruit odor smelling!

Hypothesis :
Native have good smelling senses compare to Lab bred one which are passed more than 70years, 3360 generations covered.

Possibilities :
Native want to find their own food so their antenna receptors always functional . But Lab bred culture flies don’t want find their food because of availability of food, Compare to native CsBz will less functional receptors

CsBz flies almost passed 3360 generations in this 70 year. So, there could be possible some mutants will be form inside the culture. Because these flies culturing in closed environment could be chance mutants will serve inside culture. [ Mutation is a big word - here less sensing smell capacity mention about mutants.

:black_small_square:How can we check their smelling capacity through experiment!
:black_small_square:is it possible we can do it in our home :thinking:?

Surely we can do it in our home using what are available in our home…

:black_small_square:We can replace Lab materials in to home materials to perform this Olfactory experiment


:black_small_square:How to calibrates olfactometer working or not through control experiment?

:black_small_square:How calculate mean :thinking:!? Connected Biostatistics

Yesterday discussion summary - 15.08.2021

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CUBE Chatshaala
White Boards - Short Summary

:black_small_square:We should not miss out any model systems including ant

:black_small_square:why fruit fly as a model system, why not house fly?

:black_small_square:Do fruit flies spread any disease?
:black_small_square:from students to grand mothers all are associated with CUBE

:black_small_square:How trapping of fruit flies provide context to 7th std. curriculum? Chromosomal theory of inheritance, Mendel’s law

:black_small_square:How many flies will get in 20days from 1 fly?

:black_small_square:Introduce Nobel Prize

:black_small_square:Collaboration, Communication, curiousity, context to curriculum and consistency

:black_small_square:Understanding the confusion in understanding how to calculate mean (we should highlight some of such kind of instance in chai and why? session that we take for granted)

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SUMMARY
CUBE Chatshaala

Single Line Culture updates Sidhy P. from from Thanniam - Thrissur Kerala, Restarted fruit flies works on 16-08-2021 made new single line cultures.

There is an issue while naming the cultures.Because last year July 2020 also started 5 cultures named SLTT A, B, C, D & E. But unfortunately she lost those all culture after 6 months later due to some other reasons (Goof ups)

Then February 2021 again restarted 2 single line cultures named SLTT 21A, SLTT 21B that’s also lost after 2month later.

August 2021, made 3 new single line cultures started with one mother flies naming again same that she added in pervious single line culture bottles.

:black_small_square:Why Naming Is Important!?:thinking:

:black_small_square:Importance of Nomenclature.

Whatever work we are done in at particular model systems that all works were recorded in here or somewhere.

Aashi from Haryana were joined yesterday chatshaala.
She want to addressing about how to study microbes from various corner of home. Eg : Microbes on Fridge handle.

:black_small_square:Is there any effects of sunlight in microbes.?

:black_small_square:Difference between sunlight and some other lights, how will effects microbes!

:black_small_square:Why only sunlight get effects microbes?

Culture microbes at homes!
How can we culture microbes at homes.

:black_small_square:What type of media will help to grow microbes?

Why can’t use POTATO slice for to isolate microbes.

Why microbes growing very well on potato surface ? What could be the season?

Potato contains STARCH, Carbohydrates, Irons, Vitamins etc.

What is the factors that promoting microbes growth over potato slices?

STARCH

Starch is contains carbohydrates. Starch is a polymer of glucose C6 H12 O6. Complex Carbohydrates.

:black_small_square:Importance Culture Media
:black_small_square:Which type of Culture media selecting for to culturing microbes?

Aashi Batul Adithya Aastha please add your points

Microbes are present over the surface of potato slices Picture credit : Batul


Adithya Experiment isolating microbes from using coconut water.

Experiment details giving below :point_down:

18/8/2021. The fermented coconut water was spread on the boiled potato slices. Method: boiled potato slices were taken in a container with lid. A ear bud was used to take the fermented coconut water from the bottles. One bud for open bottle and one for closed bottle. The bud was dipped/soaked in the fermented coconut water. This bud was then spreaded on potato in S shape. Marked red are inoculated slices with open bottle coconut water. Marked blue are slices with closed bottle coconut water. Marked green are the non inoculated potato slices. Expectation: No colonies seen on non inoculated potato slices. Colonies should appear on inoculated slices. Date: 18/8/2021. Aditya Joshi. Kala Talav, Kalyan west.

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Summary of CUBE Chatshaala (19/8/21)
We started discussion on Chai & Why session.
✓What is Chai & Why?
✓ Introduction of Chai & Why.
✓How to introduce all model systems.

So we started discussion on C.elegans & Phyllanthus.

In C.elegans model organism - we discussed how to connect Round worm in stomach with Nobel prize winning work & with Isolating of C.elegans on potato slices.

In Phyllanthus model organism - we discussed about how to connect Nobel prize winning work in fruit flies with Continuous light & dark experiment in Phyllanthus. also leaf angle titration connect with acid base titration.
Also highlighted on Phyllanthus niruri controversy.
yesterday’s discussion was on 4 different plants -
1.Mimosa
2. Phyllanthus
3.Cardamine
4.Mango mapping

In Phyllanthus we discussed about
@CUBE Lakshmy’s story of Phyllanthus-
Initially @CUBE Lakshmy was working on Mimosa plants for Circadian rhythm study.she also done seed germination study in Mimosa plant.
Then she working on Phyllanthus for Circadian rhythm study, Identification of Phyllanthus species,leaf angle titration.
Collaborators- @Chitra mam @Nidhi @Anushka Datta @ Anulekha @Shraddha

Then we discussed on my (Shraddha) story of Phyllanthus. I found some plants in plants pot at home.
I got interested because of Circadian rhythm study was in my MSc syllabus & because of observations done by @Harshad sir, in CUBE HBCSE.
Great observations done by Susanta Tanti Sir & their students while returning to Assam from Mumbai by train.
They were observed how many Mango trees was flowering & then they mapped it.

Then we discussed on Cardamine plant-

• we also discussed Lifecycle of Psyche butterflies on Cardamine plant were observed in G6 lab HBCSE( feb 2020).

• how many days required to get first flower buds?

• after how many Compound leaves first flower buds arose?

• why Cardamine having compound leaves & Arabidopsis having simple leaves?

Which genes responsible for leaf diversity in both?

•how do gene expressed?so we compare Cardamine- plant model organism with Moina

While understanding gene expression questions was arise-
1.what is a gene?
2.where it’s located inside the cell?
3.how gene expressed?
4.why Chromosomes are important in cell?
5.what is Chromosomes & Chromatin?
@Cube Seetalaxmi @CUBE Aswathy Suresh @CUBE Aditya Joshi @CUBE Lakshmy @Aastha @Mandar

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